Determine the mutational landscape of a protein from a Rosetta pmut_scan output.
The input files for this tool are the outputs from a pmut_scan run launched
along with relevant constraints and params files thusly:
pmut_scan_parallel -ex1 -ex1aro -ex2 -extrachi_cutoff 1 -DDG_cutoff 999 -mute basic core -s your_structure.pdb > scores.txt
-DDG_cutoff 999flag is high because we want all mutants. Actually, despite the memory, adding the
-output_mutant_structures trueflag is also rather handy for the analysis.