This section would be cool if it had a negative option and stuff like, hydrophobics use Z.
It sorts with a 2x penalty for stop and give precence to more equal distributions, in case of a tie to less degenerate codons.
Accepts three letter code with first letter capital separated by a space, or one letter with spaces or not — corner case: SER is Ser + Asp + Arg while Ser is Serine.
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Chances of a mutation
In frame sequence that was mutagenised. Note that all symbols that aren't uppecase
discarded along with a Fasta header (e.g. '>T. maritima Cystathionine β-lyase'),
therefore for masked sequences use lowercase.
Nucleotide mutation matrix
(non-negative numbers. Overall scaling is unimportant as this is taken from the 'mean number
substitutions per daughter sequence' parameter.)
Pfu D215A D473G
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